Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs12520273 | chr5:176238713 | G/T | 9.57E-7 | 214 | 9.77 | 15.48 | 16.43 | KM Plot |
| KIRP | rs12526662 | chr6:44079216 | A/G | 0.000599 | 214 | 14.83 | 18.72 | 12.1 | KM Plot |
| KIRP | rs12541087 | chr8:30029914 | G/A | 1.42E-6 | 210 | 15.88 | 15.93 | 0.2 | KM Plot |
| KIRP | rs12544416 | chr8:30039573 | G/A | 1.13E-6 | 212 | 15.88 | 17.52 | 0.2 | KM Plot |
| KIRP | rs12562720 | chr1:71166742 | A/C | 1.58E-8 | 214 | 9 | 10.67 | 16.47 | KM Plot |
| KIRP | rs12569692 | chr10:63397441 | G/A | 0 | 214 | 18.03 | 8.07 | 1.17 | KM Plot |
| KIRP | rs12569788 | chr10:74901265 | G/T | 5.34E-12 | 213 | 16.73 | 11.77 | 5.6 | KM Plot |
| KIRP | rs12569822 | chr10:75637377 | T/C | 4.32E-6 | 205 | 15.33 | 19.83 | 5.57 | KM Plot |
| KIRP | rs12570782 | chr10:75040191 | G/T | 0 | 212 | 16.43 | 15.9 | 4.07 | KM Plot |
| KIRP | rs12571247 | chr10:63501167 | C/G | 0 | 213 | 18.02 | 6.83 | 3.38 | KM Plot |
| KIRP | rs12571390 | chr10:74893932 | A/G | 5.24E-12 | 213 | 16.53 | 12.4 | 5.6 | KM Plot |
| KIRP | rs12571454 | chr10:75208955 | A/G | 4.39E-12 | 214 | 16.5 | 12.4 | 5.6 | KM Plot |
| KIRP | rs12571462 | chr10:63483933 | A/C | 0 | 213 | 18.03 | 6.2 | 3.38 | KM Plot |
| KIRP | rs12572101 | chr10:75600651 | A/G | 0 | 214 | 16.53 | 16.45 | 4.07 | KM Plot |
| KIRP | rs12572146 | chr10:74880609 | T/C | 5.24E-12 | 213 | 16.53 | 12.4 | 5.6 | KM Plot |